Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM42949.1Hypothetical protein; COG2067 Long-chain fatty acid transport protein. (364 aa)    
Predicted Functional Partners:
EDM43811.1
Outer membrane protein; COG0419 ATPase involved in DNA repair.
  
 
   0.842
EDM44224.1
COG1843 Flagellar hook capping protein.
 
     0.788
EDM44324.1
Hypothetical protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
     0.775
EDM44394.1
Hypothetical protein; COG4257 Streptogramin lyase.
  
     0.771
EDM43045.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.703
EDM43573.1
Hypothetical protein.
  
     0.699
EDM43530.1
Hypothetical protein.
  
     0.698
EDM45444.1
Hypothetical protein.
  
     0.664
EDM43162.1
COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
     0.646
EDM45199.1
Hypothetical protein.
  
     0.642
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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