STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM42950.1Hypothetical protein. (356 aa)    
Predicted Functional Partners:
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
 0.932
EDM44743.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
    
 0.832
EDM43467.1
Metallo-beta-lactamase superfamily protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
   
 0.696
EDM45006.1
Rhodanese-like protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
   
 0.696
EDM44734.1
Possible anti-sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component.
  
     0.611
EDM43969.1
Chloromuconate cycloisomerase; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.
  
  
 0.578
EDM42911.1
Ferredoxin 2 with 4Fe-4S binding domain; COG1145 Ferredoxin.
  
 
  0.578
EDM44733.1
Putative outer membrane protein probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.561
EDM42949.1
Hypothetical protein; COG2067 Long-chain fatty acid transport protein.
 
     0.555
EDM43642.1
COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.
  
 
 0.549
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.