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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM42951.1COG0395 ABC-type sugar transport system, permease component. (436 aa)    
Predicted Functional Partners:
EDM42983.1
Tyrosine-protein kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 
 0.975
EDM43003.1
Putative EPS related membrane protein; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 
 0.952
EDM42952.1
Glycosyl transferase, group 1; COG0438 Glycosyltransferase.
 
    0.825
EDM42984.1
COG1596 Periplasmic protein involved in polysaccharide export.
 
 
 0.746
EDM42956.1
Capsular polysaccharide biosynthesis protein; COG0438 Glycosyltransferase.
 
    0.650
EDM42957.1
Glycosyl transferase, group 1 family protein; COG0438 Glycosyltransferase.
 
    0.636
EDM42975.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.620
EDM43002.1
Polysaccharide export protein, BexD/CtrA/VexA family; COG1596 Periplasmic protein involved in polysaccharide export.
 
 
 0.618
EDM44217.1
COG0836 Mannose-1-phosphate guanylyltransferase.
  
 
 0.610
EDM42955.1
Hypothetical protein; COG3307 Lipid A core - O-antigen ligase and related enzymes.
  
  
 0.602
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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