STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM42956.1Capsular polysaccharide biosynthesis protein; COG0438 Glycosyltransferase. (371 aa)    
Predicted Functional Partners:
EDM42957.1
Glycosyl transferase, group 1 family protein; COG0438 Glycosyltransferase.
 
     0.942
EDM42958.1
Glycosyl transferase, family 2; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
    0.933
EDM42960.1
COG0438 Glycosyltransferase.
 
     0.867
EDM42962.1
COG0438 Glycosyltransferase.
 
     0.847
EDM42966.1
Hypothetical protein; COG0438 Glycosyltransferase.
 
     0.832
EDM42952.1
Glycosyl transferase, group 1; COG0438 Glycosyltransferase.
 
     0.821
EDM42955.1
Hypothetical protein; COG3307 Lipid A core - O-antigen ligase and related enzymes.
  
 
  0.778
EDM42959.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
       0.773
EDM42951.1
COG0395 ABC-type sugar transport system, permease component.
 
 
  0.688
EDM42983.1
Tyrosine-protein kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 
 0.613
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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