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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM42972.1COG0110 Acetyltransferase (isoleucine patch superfamily). (197 aa)    
Predicted Functional Partners:
EDM42975.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
 
 0.807
EDM42971.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
    0.777
EDM42973.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
    0.777
EDM42999.1
COG0110 Acetyltransferase (isoleucine patch superfamily).
 
     0.747
EDM42970.1
Amylovoran biosynthesis glycosyl transferase AmsK; COG0438 Glycosyltransferase.
  
    0.746
EDM42976.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
    0.736
EDM42974.1
COG1216 Predicted glycosyltransferases.
       0.734
EDM42977.1
Hypothetical protein; COG3562 Capsule polysaccharide export protein.
       0.586
atpD
F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
  0.549
atpG
ATP synthase, subunit gamma (H(+)-transporting two-sector ATPase); Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
    
  0.508
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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