STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM42974.1COG1216 Predicted glycosyltransferases. (308 aa)    
Predicted Functional Partners:
EDM42975.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
 
  0.858
EDM42976.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
    
  0.777
EDM42970.1
Amylovoran biosynthesis glycosyl transferase AmsK; COG0438 Glycosyltransferase.
 
    0.771
EDM42971.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
    
  0.736
EDM42973.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
    
  0.736
EDM42980.1
ABC transporter permease protein; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
  
 0.735
EDM42972.1
COG0110 Acetyltransferase (isoleucine patch superfamily).
       0.732
EDM42979.1
Polysialic acid transport ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
  
 0.699
EDM45357.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
 
  0.649
EDM42977.1
Hypothetical protein; COG3562 Capsule polysaccharide export protein.
       0.609
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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