EDM42985.1 protein (unidentified eubacterium SCB49)

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EDM42985.1

COG0488 ATPase components of ABC transporters with duplicated ATPase domains. (622 aa)

Predicted Functional Partners:

rplU

0.720

rpsO-2

0.718

rpsC

0.718

rpmD

0.718

rpmH

0.716

rpsJ

0.711

rplC

0.711

rpsS

0.711

rpmF

0.709

rplW

0.709

Your Current Organism:

unidentified eubacterium SCB49

NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDM42985.1	rplC	SCB49_01737	SCB49_09500	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.711
EDM42985.1	rplU	SCB49_01737	SCB49_07602	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.720
EDM42985.1	rplW	SCB49_01737	SCB49_09510	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.709
EDM42985.1	rpmD	SCB49_01737	SCB49_09590	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	COG1841 Ribosomal protein L30/L7E.	0.718
EDM42985.1	rpmF	SCB49_01737	SCB49_05807	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.709
EDM42985.1	rpmH	SCB49_01737	SCB49_00175	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Thiol-disulfide oxidoreductase; Belongs to the bacterial ribosomal protein bL34 family.	0.716
EDM42985.1	rpsC	SCB49_01737	SCB49_09530	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.718
EDM42985.1	rpsJ	SCB49_01737	SCB49_09495	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.711
EDM42985.1	rpsO-2	SCB49_01737	SCB49_09305	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Putative 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.718
EDM42985.1	rpsS	SCB49_01737	SCB49_09520	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.711
rplC	EDM42985.1	SCB49_09500	SCB49_01737	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	0.711
rplC	rplU	SCB49_09500	SCB49_07602	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.993
rplC	rplW	SCB49_09500	SCB49_09510	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplC	rpmD	SCB49_09500	SCB49_09590	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	COG1841 Ribosomal protein L30/L7E.	0.997
rplC	rpmF	SCB49_09500	SCB49_05807	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.975
rplC	rpmH	SCB49_09500	SCB49_00175	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Thiol-disulfide oxidoreductase; Belongs to the bacterial ribosomal protein bL34 family.	0.945
rplC	rpsC	SCB49_09500	SCB49_09530	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.998
rplC	rpsJ	SCB49_09500	SCB49_09495	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rplC	rpsO-2	SCB49_09500	SCB49_09305	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Putative 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.980
rplC	rpsS	SCB49_09500	SCB49_09520	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999