STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpsT30S ribosomal protein S20; COG3464 Transposase and inactivated derivatives. (96 aa)    
Predicted Functional Partners:
EDM42820.1
COG3464 Transposase and inactivated derivatives.
     0.963
EDM43901.1
COG3464 Transposase and inactivated derivatives.
 
     0.928
EDM42822.1
COG3464 Transposase and inactivated derivatives.
 
    
0.553
EDM42821.1
Hypothetical protein.
      0.512
EDM42819.1
Hypothetical protein.
       0.459
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.