STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM42829.1CHU large protein; COG3188 P pilus assembly protein, porin PapC. (289 aa)    
Predicted Functional Partners:
EDM44819.1
Hypothetical protein; COG3291 FOG: PKD repeat.
 
     0.966
EDM42817.1
Hypothetical protein.
 
     0.960
ppnK
Inorganic polyphosphate/ATP-NAD kinase.
  
 
  0.809
EDM45658.1
Hypothetical protein; COG0018 Arginyl-tRNA synthetase.
  
     0.768
EDM45507.1
CHU large protein; mannosidase-related protein.
 
     0.704
EDM45258.1
Gliding motility-related protein; COG0457 FOG: TPR repeat.
  
 
   0.689
EDM45508.1
Hypothetical protein; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
  
     0.672
EDM43567.1
Hypothetical protein.
  
 
   0.672
EDM45509.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
  
  0.630
EDM42984.1
COG1596 Periplasmic protein involved in polysaccharide export.
  
  
  0.611
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
Server load: low (32%) [HD]