STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44841.1Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein. (195 aa)    
Predicted Functional Partners:
EDM44840.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
 
     0.954
EDM44842.1
RNA polymerase sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.814
EDM44090.1
Hypothetical protein.
  
     0.667
EDM45608.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.663
EDM43660.1
Hypothetical protein.
  
     0.651
EDM43187.1
Hypothetical protein.
  
     0.625
EDM43948.1
Hypothetical protein.
  
     0.622
valS
valyl-tRNA synthetase; COG4281 Acyl-CoA-binding protein.
  
     0.596
obgE
GTPase ObgE.
  
     0.587
EDM44923.1
Tetratricopeptide TPR_2; COG0457 FOG: TPR repeat.
  
     0.572
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.