STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44867.1Hypothetical protein; COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit. (282 aa)    
Predicted Functional Partners:
EDM44865.1
Hypothetical protein.
       0.778
EDM44866.1
Response regulatory protein, sigma 54 related; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
       0.773
EDM43040.1
COG5651 PPE-repeat proteins.
  
     0.721
EDM44869.1
ABC transporter, permease protein, putative; COG1668 ABC-type Na+ efflux pump, permease component.
       0.629
EDM44392.1
COG3047 Outer membrane protein W.
  
     0.629
EDM44779.1
Hypothetical protein.
  
     0.598
EDM44868.1
Mechanosensitive ion channel family protein; COG3264 Small-conductance mechanosensitive channel.
       0.597
EDM45682.1
Hypothetical protein.
  
     0.566
EDM44310.1
Hypothetical protein.
  
     0.542
EDM44760.1
Hypothetical protein.
  
     0.514
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.