Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44898.1Hypothetical protein. (251 aa)    
Predicted Functional Partners:
EDM44899.1
Hypothetical protein.
       0.783
EDM44897.1
Curli production assembly/transport component CsgF precursor.
       0.742
EDM44896.1
COG1462 Uncharacterized protein involved in formation of curli polymers.
       0.736
EDM44895.1
tolB protein; COG0823 Periplasmic component of the Tol biopolymer transport system.
       0.727
EDM44894.1
Putative phosphoribosylformylglycinamidine cyclo-ligase; COG0150 Phosphoribosylaminoimidazole (AIR) synthetase.
       0.517
EDM44900.1
Curlin associated repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
       0.456
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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