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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44907.1Hypothetical protein. (281 aa)    
Predicted Functional Partners:
EDM44908.1
Hypothetical protein.
       0.768
EDM44910.1
COG0782 Transcription elongation factor.
 
     0.717
EDM44909.1
Hypothetical protein.
       0.677
EDM45510.1
Hypothetical protein.
  
     0.612
EDM44736.1
Hypothetical protein.
  
     0.609
EDM44733.1
Putative outer membrane protein probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.599
EDM44911.1
COG0334 Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
    0.574
EDM45168.1
COG1544 Ribosome-associated protein Y (PSrp-1).
  
    0.561
EDM45174.1
Transcriptional regulator; COG0784 FOG: CheY-like receiver.
 
  
 0.547
EDM45175.1
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
     0.543
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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