STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44935.1Holliday junction DNA helicase; COG0515 Serine/threonine protein kinase; Belongs to the AAA ATPase family. (591 aa)    
Predicted Functional Partners:
EDM44934.1
COG0443 Molecular chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.975
EDM44932.1
Heat shock protein Hsp70; COG0443 Molecular chaperone.
 
 
 0.972
EDM44930.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
 
 0.952
EDM44461.1
GGDEF domain protein; COG3292 Predicted periplasmic ligand-binding sensor domain.
  
 0.909
EDM44414.1
COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
   
 0.907
EDM43992.1
Tetratricopeptide repeat family protein; COG0457 FOG: TPR repeat.
  
 0.868
EDM45729.1
Hypothetical protein; COG0790 FOG: TPR repeat, SEL1 subfamily.
 
 
 0.847
EDM43472.1
COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family.
   
 
 0.818
EDM44691.1
COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family.
   
 
 0.818
ribB
Bifunctional protein: GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
 
 0.789
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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