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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44944.1Hypothetical protein; COG0465 ATP-dependent Zn proteases. (360 aa)    
Predicted Functional Partners:
EDM43445.1
Hypothetical protein.
    
 0.926
EDM45729.1
Hypothetical protein; COG0790 FOG: TPR repeat, SEL1 subfamily.
   
 0.806
EDM43992.1
Tetratricopeptide repeat family protein; COG0457 FOG: TPR repeat.
   
 0.790
EDM44414.1
COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
   
 0.782
EDM45535.1
Hypothetical protein; COG1100 GTPase SAR1 and related small G proteins.
    
 0.756
EDM43937.1
Heat shock protein 90; COG0326 Molecular chaperone, HSP90 family.
    
 0.746
EDM44791.1
DNA polymerase III, beta-subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.714
EDM45192.1
ABC transporter, ATP-binding/membrane-spanning protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.
    
 0.586
EDM43919.1
ABC transporter related protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.
    
 0.586
EDM43186.1
ABC transporter, ATP-binding/permease protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.
    
 0.586
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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