STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44946.1Hypothetical protein; COG1882 Pyruvate-formate lyase. (211 aa)    
Predicted Functional Partners:
EDM44924.1
Putative fimbrial protein Z, transcriptional regulator (LuxR/UhpA family); COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
     0.748
EDM44923.1
Tetratricopeptide TPR_2; COG0457 FOG: TPR repeat.
 
     0.735
EDM45394.1
Alginate lyase.
  
     0.547
EDM43742.1
Type I phosphodiesterase/nucleotide pyrophosphatase.
  
     0.459
EDM45391.1
Poly(beta-D-mannuronate) lyase.
  
     0.454
EDM42922.1
Hypothetical protein.
  
     0.429
EDM42919.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.408
EDM43739.1
Type I phosphodiesterase/nucleotide pyrophosphatase.
  
     0.403
EDM44321.1
Hypothetical protein; COG0421 Spermidine synthase.
  
     0.401
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.