STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44949.1Hypothetical protein; COG0708 Exonuclease III. (308 aa)    
Predicted Functional Partners:
EDM45145.1
Tetratricopeptide repeat family protein; COG0457 FOG: TPR repeat.
 
     0.650
EDM44950.1
Hypothetical protein.
       0.645
EDM43742.1
Type I phosphodiesterase/nucleotide pyrophosphatase.
  
     0.563
EDM43431.1
Aminotransferase; COG0520 Selenocysteine lyase.
    
   0.553
EDM45514.1
Cysteine desulfurase, SufS subfamily protein; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.553
EDM43554.1
Hypothetical isopenicillin N epimerase; COG0520 Selenocysteine lyase.
    
   0.553
EDM43739.1
Type I phosphodiesterase/nucleotide pyrophosphatase.
  
     0.552
EDM45393.1
Natural resistance-associated macrophage protein; COG1914 Mn2+ and Fe2+ transporters of the NRAMP family.
  
     0.528
EDM44948.1
Lipase/acylhydrolase family protein; COG2755 Lysophospholipase L1 and related esterases.
     
 0.499
EDM43770.1
COG2829 Outer membrane phospholipase A.
  
  
 0.441
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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