STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44952.1Hypothetical protein; COG0286 Type I restriction-modification system methyltransferase subunit. (541 aa)    
Predicted Functional Partners:
EDM44953.1
Type I restriction-modification system specificity determinant protein; COG0732 Restriction endonuclease S subunits.
 
 0.996
EDM44951.1
COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases.
 
  
 0.976
EDM42832.1
COG0732 Restriction endonuclease S subunits.
 
 0.953
EDM43960.1
Hypothetical protein.
  
 0.855
EDM44954.1
Hypothetical protein.
       0.773
atpF
ATP synthase, subunit B (H(+)-transporting two-sector ATPase); Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
   
 0.617
uvrB
Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
    
  0.595
EDM42834.1
DEAD/DEAH box helicase; COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases.
  
  
 0.574
EDM44961.1
5-Methylcytosine-specific restriction enzyme B; COG1196 Chromosome segregation ATPases.
    
 0.572
EDM44962.1
COG4268 McrBC 5-methylcytosine restriction system component.
    
  0.551
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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