STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44970.1Secretion protein HlyD; COG0845 Membrane-fusion protein. (380 aa)    
Predicted Functional Partners:
EDM44968.1
COG1538 Outer membrane protein.
 
  0.993
EDM44969.1
RND family efflux transporter; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.984
EDM45595.1
COG1538 Outer membrane protein.
  
  0.883
EDM43392.1
COG1538 Outer membrane protein.
   
  0.859
EDM44993.1
Outer membrane efflux family protein, putative; COG1538 Outer membrane protein.
   
  0.859
EDM45665.1
COG1538 Outer membrane protein.
   
  0.827
EDM44138.1
Putative outer membrane lipoprotein precursor; COG1538 Outer membrane protein.
   
  0.827
EDM44992.1
Acriflavin resistance protein AcrE, putative; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
  0.793
EDM45594.1
Cation efflux system protein/acriflavin resistance protein B family; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
  0.793
EDM45664.1
Membrane fusion efflux protein, putative; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
    
  0.793
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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