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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44983.1Hypothetical protein. (173 aa)    
Predicted Functional Partners:
groES
Co-chaperonin GroES; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
     0.851
EDM44984.1
Hypothetical protein.
 
    0.840
EDM44982.1
Transcriptional regulator, sigma-54-related protein; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
       0.754
EDM44331.1
Hypothetical protein.
  
     0.746
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
    0.744
EDM44287.1
Hypothetical protein; COG4208 ABC-type sulfate transport system, permease component.
  
     0.739
EDM43780.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.718
EDM45690.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.690
EDM42828.1
Putative hemin receptor.
  
     0.666
EDM43076.1
Hypothetical protein.
  
     0.666
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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