STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45002.1TonB dependent receptor, putative; COG1629 Outer membrane receptor proteins, mostly Fe transport. (687 aa)    
Predicted Functional Partners:
EDM45001.1
Hypothetical protein.
 
     0.878
EDM45003.1
COG2365 Protein tyrosine/serine phosphatase.
 
     0.841
EDM44993.1
Outer membrane efflux family protein, putative; COG1538 Outer membrane protein.
  
     0.740
EDM45011.1
Hypothetical protein.
  
     0.731
EDM44992.1
Acriflavin resistance protein AcrE, putative; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.662
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.
     
  0.601
EDM44995.1
Sulfide-quinone reductase, putative; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
  
     0.549
EDM45178.1
Hypothetical protein.
  
     0.528
EDM44991.1
Transporter, AcrB/D/F family protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
     0.476
EDM45062.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
   
  0.469
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.