STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45015.1COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (454 aa)    
Predicted Functional Partners:
EDM43712.1
COG3278 Cbb3-type cytochrome oxidase, subunit 1; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.939
hemE
Uroporphyrinogen-III decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
  
 0.873
EDM45445.1
COG1981 Predicted membrane protein.
 
  
 0.844
EDM45432.1
COG0408 Coproporphyrinogen III oxidase.
    
 0.813
EDM43709.1
COG0348 Polyferredoxin.
 
  
 0.775
EDM43969.1
Chloromuconate cycloisomerase; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.
     
  0.749
EDM43706.1
Hypothetical protein.
 
     0.723
EDM43710.1
COG2010 Cytochrome c, mono- and diheme variants.
 
    0.709
EDM43714.1
Cu(I)-translocating P-type ATPase; COG2217 Cation transport ATPase.
 
     0.708
EDM45016.1
Methyltransferase type 11; COG0500 SAM-dependent methyltransferases.
       0.598
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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