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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM45055.1Hypothetical protein. (64 aa)    
Predicted Functional Partners:
EDM45057.1
TPR domain protein; COG0457 FOG: TPR repeat.
 
     0.818
EDM45056.1
Hypothetical protein; COG0726 Predicted xylanase/chitin deacetylase.
       0.792
EDM45058.1
Putative outer membrane protein; COG2067 Long-chain fatty acid transport protein.
       0.792
coaX
Putative regulatory protein; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.792
EDM43113.1
COG0236 Acyl carrier protein.
  
     0.642
EDM43871.1
Hypothetical protein.
  
     0.625
EDM45590.1
Hypothetical protein.
  
     0.597
EDM43554.1
Hypothetical isopenicillin N epimerase; COG0520 Selenocysteine lyase.
  
     0.588
EDM45227.1
Hypothetical protein.
  
     0.571
EDM43541.1
COG1396 Predicted transcriptional regulators.
  
     0.547
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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