STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45057.1TPR domain protein; COG0457 FOG: TPR repeat. (471 aa)    
Predicted Functional Partners:
EDM45056.1
Hypothetical protein; COG0726 Predicted xylanase/chitin deacetylase.
 
     0.887
EDM43338.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
 0.834
EDM45055.1
Hypothetical protein.
 
     0.833
EDM45347.1
Hypothetical protein.
 
  
  0.813
EDM45058.1
Putative outer membrane protein; COG2067 Long-chain fatty acid transport protein.
       0.809
coaX
Putative regulatory protein; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.809
EDM45609.1
Hypothetical protein.
  
     0.774
EDM44096.1
Hypothetical protein.
  
     0.774
EDM44262.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
     0.773
EDM45610.1
Hypothetical protein; COG0206 Cell division GTPase.
  
     0.770
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.