STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45065.1COG0811 Biopolymer transport proteins. (232 aa)    
Predicted Functional Partners:
EDM45063.1
Putative tansport related protein; COG0848 Biopolymer transport protein.
 
 0.968
EDM45609.1
Hypothetical protein.
 
 0.921
EDM45610.1
Hypothetical protein; COG0206 Cell division GTPase.
 
 0.909
EDM45062.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
 
 0.907
EDM43010.1
Hypothetical protein; COG2214 DnaJ-class molecular chaperone.
 
 0.899
EDM45683.1
Hypothetical protein.
 
 0.826
EDM43558.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
 0.821
EDM43339.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
 
 0.680
EDM45066.1
COG1055 Na+/H+ antiporter NhaD and related arsenite permeases.
       0.679
EDM43376.1
ABC transporter, ATP-binding protein; COG1137 ABC-type (unclassified) transport system, ATPase component.
  
     0.674
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.