STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45117.1Hypothetical protein; COG3407 Mevalonate pyrophosphate decarboxylase. (366 aa)    
Predicted Functional Partners:
EDM45052.1
Hypothetical protein.
 
 
 0.963
EDM45115.1
COG1577 Mevalonate kinase.
 
 
 0.963
EDM43309.1
Isopentenyl-diphosphate delta-isomerase; COG1443 Isopentenyldiphosphate isomerase.
 
 
 0.942
EDM45051.1
Hypothetical protein; COG1257 Hydroxymethylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family.
 
 
 0.909
EDM45597.1
Putative isoprenoid biosynthesis related protein; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.844
EDM45106.1
COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.
    
 0.696
EDM45118.1
COG3797 Uncharacterized protein conserved in bacteria.
       0.661
EDM43743.1
COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.567
EDM43072.1
Hypothetical protein.
   
 
 0.558
EDM44974.1
Hypothetical protein.
  
     0.510
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.