STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45124.1COG4206 Outer membrane cobalamin receptor protein. (607 aa)    
Predicted Functional Partners:
EDM45123.1
Transcriptional regulator, GntR family protein; COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.
 
     0.895
EDM43466.1
Hypothetical protein; COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases.
  
  
  0.722
EDM44392.1
COG3047 Outer membrane protein W.
  
  
  0.698
EDM44507.1
Hypothetical secreted protein.
    
  0.642
EDM42984.1
COG1596 Periplasmic protein involved in polysaccharide export.
     
  0.548
EDM43002.1
Polysaccharide export protein, BexD/CtrA/VexA family; COG1596 Periplasmic protein involved in polysaccharide export.
     
  0.548
EDM43052.1
Hypothetical protein.
     
  0.548
EDM43962.1
Outer membrane protein.
     
  0.521
EDM42925.1
COG4775 Outer membrane protein/protective antigen OMA87.
     
  0.521
EDM43221.1
Outer membrane protein; COG2831 Hemolysin activation/secretion protein.
     
  0.521
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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