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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM45142.1Hypothetical protein; COG0477 Permeases of the major facilitator superfamily. (330 aa)    
Predicted Functional Partners:
EDM45143.1
B-glycosyltransferase-related protein, glycosyltransferase family 2 protein; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
 
     0.927
EDM45682.1
Hypothetical protein.
  
     0.742
EDM44392.1
COG3047 Outer membrane protein W.
  
     0.711
EDM45659.1
Hypothetical protein.
  
     0.701
EDM45217.1
Putative transmembrane glycosyltransferase; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
 
     0.686
EDM43874.1
COG4122 Predicted O-methyltransferase.
  
     0.683
EDM42817.1
Hypothetical protein.
  
     0.629
EDM44819.1
Hypothetical protein; COG3291 FOG: PKD repeat.
  
     0.625
EDM44259.1
Geranylgeranylglyceryl phosphate synthase-like protein; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P).
  
     0.606
ruvC
Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
       0.601
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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