STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45149.1COG4886 Leucine-rich repeat (LRR) protein. (308 aa)    
Predicted Functional Partners:
EDM45150.1
Twin-arginine translocation pathway signal; COG3211 Predicted phosphatase.
 
     0.855
EDM45563.1
Hypothetical protein.
  
     0.499
EDM43026.1
Hypothetical protein.
  
   
 0.418
EDM45151.1
COG1858 Cytochrome c peroxidase.
 
     0.410
EDM43897.1
Hypothetical protein; COG4886 Leucine-rich repeat (LRR) protein.
  
     0.409
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.