STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45152.1Hypothetical protein; COG0778 Nitroreductase. (187 aa)    
Predicted Functional Partners:
EDM45645.1
COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
    
  0.759
EDM44611.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
  
 0.608
EDM43642.1
COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.
  
 
 0.560
EDM45151.1
COG1858 Cytochrome c peroxidase.
       0.535
EDM45557.1
Bifunctional protein: riboflavin kinase; COG0196 FAD synthase; Belongs to the ribF family.
    
 0.533
EDM44602.1
Hypothetical protein; COG0655 Multimeric flavodoxin WrbA.
    
 0.527
EDM44470.1
COG0431 Predicted flavoprotein.
     
 0.523
EDM44835.1
Probable cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
    
  0.506
EDM43971.1
Putative O-succinylbenzoate--CoA ligase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
   
   0.502
phhB
COG2154 Pterin-4a-carbinolamine dehydratase.
   
 
  0.502
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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