STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45157.1Hypothetical protein; COG1196 Chromosome segregation ATPases. (133 aa)    
Predicted Functional Partners:
EDM45158.1
Ribulose-phosphate 3-epimerase (D-ribulose-5-phosphate 3-epimerase); COG0036 Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.775
EDM45173.1
Sensor histidine kinase; COG2202 FOG: PAS/PAC domain.
 
 0.772
EDM45178.1
Hypothetical protein.
  
     0.585
EDM44862.1
Phosphoenolpyruvate-protein phosphotransferase; COG3412 Uncharacterized protein conserved in bacteria; Belongs to the PEP-utilizing enzyme family.
     
 0.576
EDM45174.1
Transcriptional regulator; COG0784 FOG: CheY-like receiver.
  
  
 0.563
EDM43948.1
Hypothetical protein.
 
  
 0.521
EDM45159.1
Pyridine nucleotide-disulphide oxidoreductase, putative; COG0492 Thioredoxin reductase.
       0.509
EDM45156.1
RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.491
EDM42881.1
Sensor histidine kinase/GAF domain hybrid protein; COG2203 FOG: GAF domain.
 
  
 0.483
EDM45221.1
COG0642 Signal transduction histidine kinase.
  
 
 0.477
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.