STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45174.1Transcriptional regulator; COG0784 FOG: CheY-like receiver. (349 aa)    
Predicted Functional Partners:
EDM45173.1
Sensor histidine kinase; COG2202 FOG: PAS/PAC domain.
 0.998
EDM44338.1
Histidine kinase; COG0642 Signal transduction histidine kinase.
 0.987
EDM45221.1
COG0642 Signal transduction histidine kinase.
 
 0.986
EDM45534.1
Hybrid sensory kinase; COG0642 Signal transduction histidine kinase.
 0.986
EDM43866.1
Two-component system sensor histidine kinase; COG0642 Signal transduction histidine kinase.
 
 0.984
EDM42881.1
Sensor histidine kinase/GAF domain hybrid protein; COG2203 FOG: GAF domain.
 0.980
EDM44685.1
Putative adenylate/guanylate cyclase; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
 0.961
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.938
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.936
EDM43671.1
Two-component sensor histidine kinase, phosphate regulation; COG0642 Signal transduction histidine kinase.
 0.934
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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