STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45175.1COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (278 aa)    
Predicted Functional Partners:
EDM45173.1
Sensor histidine kinase; COG2202 FOG: PAS/PAC domain.
 
   
 0.894
EDM45174.1
Transcriptional regulator; COG0784 FOG: CheY-like receiver.
 
  
 0.886
EDM45172.1
Hypothetical protein; COG0313 Predicted methyltransferases.
 
     0.706
EDM44733.1
Putative outer membrane protein probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.612
EDM45176.1
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
 
    
0.611
EDM44734.1
Possible anti-sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component.
  
     0.544
EDM44907.1
Hypothetical protein.
  
     0.543
EDM45177.1
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
 
    
0.513
EDM45178.1
Hypothetical protein.
 
     0.474
EDM43810.1
Putative outer membrane protein probably involved in nutrient binding; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.416
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.