Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45183.1Hypothetical protein; Belongs to the ClpS family. (91 aa)    
Predicted Functional Partners:
prmA
COG2264 Ribosomal protein L11 methylase.
 
     0.843
clpB
Putative heat shock ClpB protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
  
 
 0.815
EDM44115.1
ATP-dependent Clp protease, ATP-binding subunit; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.
  
 
 0.815
EDM45005.1
COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.
   
   0.770
EDM45713.1
COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.
   
   0.770
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
       0.732
EDM44024.1
Hypothetical protein.
  
     0.658
EDM45511.1
Hypothetical protein.
  
     0.611
EDM45187.1
Hypothetical protein.
 
     0.599
EDM44374.1
Hypothetical protein.
  
     0.588
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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