STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45186.1COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (357 aa)    
Predicted Functional Partners:
EDM45037.1
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.999
EDM45421.1
ABC transporter, ATP-binding protein; COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 0.999
EDM43426.1
Oligopeptide ABC transporter, solute-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
 
 0.997
EDM45187.1
Hypothetical protein.
     
 0.812
EDM45188.1
Hypothetical protein.
       0.647
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
       0.626
EDM45457.1
Zinc ABC transporter, ATP-binding protein; COG1121 ABC-type Mn/Zn transport systems, ATPase component.
     
 0.594
EDM45286.1
Hypothetical protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
     
 0.590
EDM44661.1
ABC transporter ATP-binding protein; COG1137 ABC-type (unclassified) transport system, ATPase component.
  
  
  0.584
prmA
COG2264 Ribosomal protein L11 methylase.
       0.578
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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