STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45194.1Hypothetical protein; COG0622 Predicted phosphoesterase. (163 aa)    
Predicted Functional Partners:
EDM44333.1
Ankyrin; COG0666 FOG: Ankyrin repeat.
  
 
  0.733
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
   0.670
EDM43270.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.653
EDM45097.1
Hypothetical protein.
    
  0.639
EDM44434.1
Hypothetical protein; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
    
  0.639
EDM45565.1
Hypothetical protein; COG0666 FOG: Ankyrin repeat.
    
  0.639
EDM45192.1
ABC transporter, ATP-binding/membrane-spanning protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.
       0.532
EDM43960.1
Hypothetical protein.
  
     0.523
EDM42981.1
NAD-dependent epimerase/dehydratase family protein; COG0451 Nucleoside-diphosphate-sugar epimerases.
     
  0.497
EDM44846.1
3-beta hydroxysteroid dehydrogenase/isomerase; COG0451 Nucleoside-diphosphate-sugar epimerases.
     
  0.497
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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