Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45212.1Hypothetical protein. (131 aa)    
Predicted Functional Partners:
EDM44706.1
Hypothetical protein.
  
     0.615
valS-2
Putative valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.557
EDM43659.1
COG1587 Uroporphyrinogen-III synthase.
  
     0.551
EDM45213.1
COG0436 Aspartate/tyrosine/aromatic aminotransferase.
       0.483
EDM45298.1
Hypothetical protein.
  
     0.464
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.462
EDM45575.1
Hypothetical protein.
  
     0.443
EDM43558.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
     0.415
EDM43316.1
Hypothetical protein; COG2183 Transcriptional accessory protein.
  
     0.413
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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