Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDM45224.1Hypothetical protein; COG1196 Chromosome segregation ATPases. (260 aa)    
Predicted Functional Partners:
EDM45223.1
Hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
 
  
 0.875
ribB
Bifunctional protein: GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.862
EDM45690.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.738
EDM45495.1
Putative regulatory protein; COG1734 DnaK suppressor protein.
 
     0.726
EDM43659.1
COG1587 Uroporphyrinogen-III synthase.
  
     0.719
EDM43270.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
 
     0.691
EDM42941.1
Putative transmembrane permease; COG4591 ABC-type transport system, involved in lipoprotein release, permease component.
  
     0.691
EDM43510.1
Hypothetical protein.
  
     0.671
nusA
Transcription elongation factor NusA; Participates in both transcription termination and antitermination.
  
     0.621
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
       0.609
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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