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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44185.1COG0457 FOG: TPR repeat. (303 aa)    
Predicted Functional Partners:
EDM44392.1
COG3047 Outer membrane protein W.
 
     0.777
EDM43040.1
COG5651 PPE-repeat proteins.
  
     0.759
EDM43573.1
Hypothetical protein.
  
     0.752
EDM45682.1
Hypothetical protein.
  
     0.750
EDM45659.1
Hypothetical protein.
  
     0.724
EDM45251.1
COG1272 Predicted membrane protein, hemolysin III homolog.
  
     0.690
EDM45027.1
COG4083 Predicted membrane protein.
  
     0.689
EDM45616.1
Hypothetical protein.
  
     0.681
EDM42817.1
Hypothetical protein.
  
     0.674
EDM45372.1
Possible capK protein; COG1541 Coenzyme F390 synthetase.
  
     0.657
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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