STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44242.1COG0463 Glycosyltransferases involved in cell wall biogenesis. (250 aa)    
Predicted Functional Partners:
EDM44237.1
COG3222 Uncharacterized protein conserved in bacteria.
     0.986
EDM44241.1
Hypothetical protein.
 
     0.865
EDM44231.1
COG3222 Uncharacterized protein conserved in bacteria.
 
     0.803
EDM44230.1
Hypothetical protein; COG0535 Predicted Fe-S oxidoreductases.
 
     0.732
EDM44240.1
Hypothetical protein; COG3000 Sterol desaturase.
 
 
   0.563
EDM44236.1
Hypothetical protein; COG0607 Rhodanese-related sulfurtransferase.
 
     0.556
EDM44235.1
COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.
 
 
   0.482
EDM44234.1
Hypothetical protein; COG0591 Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.476
thrS
threonine--tRNA ligase (threonine tRNA synthetase); Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
   
 
  0.465
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.