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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44252.1Putative TonB-dependent transmembrane receptor protein; COG1629 Outer membrane receptor proteins, mostly Fe transport. (726 aa)    
Predicted Functional Partners:
EDM44257.1
COG3201 Nicotinamide mononucleotide transporter.
 
    0.776
EDM44256.1
NadR-like protein; COG3172 Predicted ATPase/kinase involved in NAD metabolism.
 
     0.674
EDM45062.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
  0.644
EDM43529.1
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.607
EDM45683.1
Hypothetical protein.
   
  0.588
EDM43558.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
   
  0.588
EDM44258.1
Hypothetical protein.
 
     0.497
EDM44253.1
Hypothetical protein.
       0.458
EDM45063.1
Putative tansport related protein; COG0848 Biopolymer transport protein.
  
 
  0.447
EDM43287.1
Hypothetical protein.
    
   0.408
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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