STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44252.1Putative TonB-dependent transmembrane receptor protein; COG1629 Outer membrane receptor proteins, mostly Fe transport. (726 aa)    
Predicted Functional Partners:
EDM44257.1
COG3201 Nicotinamide mononucleotide transporter.
 
    0.801
EDM44256.1
NadR-like protein; COG3172 Predicted ATPase/kinase involved in NAD metabolism.
 
     0.702
EDM43529.1
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.607
EDM42984.1
COG1596 Periplasmic protein involved in polysaccharide export.
  
  
  0.600
EDM45062.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
  0.596
EDM43002.1
Polysaccharide export protein, BexD/CtrA/VexA family; COG1596 Periplasmic protein involved in polysaccharide export.
  
  
  0.572
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.
     
  0.563
EDM45509.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
  
  
  0.543
EDM45683.1
Hypothetical protein.
   
  0.533
EDM43558.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
   
  0.533
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.