STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44265.1Gliding motility-related protein. (2412 aa)    
Predicted Functional Partners:
EDM44223.1
Hypothetical protein; COG2067 Long-chain fatty acid transport protein.
  
 
 
 0.967
EDM44170.1
Hypothetical protein; COG0364 Glucose-6-phosphate 1-dehydrogenase.
  
 
   0.962
EDM45258.1
Gliding motility-related protein; COG0457 FOG: TPR repeat.
  
 
 
 0.946
EDM43686.1
COG2176 DNA polymerase III, alpha subunit (gram-positive type).
  
 
 0.923
EDM45689.1
Outer membrane protein, ompH family; COG2825 Outer membrane protein.
  
 
   0.908
EDM44791.1
DNA polymerase III, beta-subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
    
 0.871
EDM43146.1
Peptidase, S24 family, UV repair protein; COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases).
  
 0.850
recA
DNA recombination protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.843
EDM44977.1
Lipoprotein, putative.
  
   
 0.834
EDM43782.1
PorT-related protein.
  
   
 0.830
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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