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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44287.1Hypothetical protein; COG4208 ABC-type sulfate transport system, permease component. (1099 aa)    
Predicted Functional Partners:
yidC
Putative inner membrane protein translocase component YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
     0.763
EDM45689.1
Outer membrane protein, ompH family; COG2825 Outer membrane protein.
  
     0.761
EDM42934.1
Hypothetical protein; COG0795 Predicted permeases.
  
     0.749
EDM44039.1
Hypothetical protein; COG2317 Zn-dependent carboxypeptidase.
  
     0.748
EDM44983.1
Hypothetical protein.
  
     0.739
EDM43127.1
COG4232 Thiol:disulfide interchange protein.
  
     0.737
EDM45114.1
4-hydroxybenzoate-octaprenyltransferase; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.
  
    0.715
EDM43782.1
PorT-related protein.
  
     0.699
EDM45690.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.694
EDM44331.1
Hypothetical protein.
  
     0.692
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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