STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44295.1Lipase (putative secreted protein); COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases. (364 aa)    
Predicted Functional Partners:
EDM44647.1
COG1250 3-hydroxyacyl-CoA dehydrogenase.
   
 
  0.755
EDM44888.1
Hypothetical protein.
  
  
  0.754
EDM43809.1
Putative outer membrane receptor protein.
  
  
  0.754
EDM43810.1
Putative outer membrane protein probably involved in nutrient binding; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.746
EDM43569.1
Hypothetical protein.
    
   0.670
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.646
EDM43883.1
Hypothetical protein.
  
     0.633
EDM43243.1
CHU large protein; uncharacterized.
  
  
  0.630
EDM44504.1
COG1454 Alcohol dehydrogenase, class IV.
  
 
 0.607
EDM44182.1
Hypothetical protein.
  
     0.574
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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