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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44322.1Outer membrane protein, OmpA family; COG1196 Chromosome segregation ATPases. (323 aa)    
Predicted Functional Partners:
EDM43081.1
Hypothetical protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
 
   0.676
EDM44047.1
OmpA/MotB; COG0209 Ribonucleotide reductase, alpha subunit.
  
 
  0.601
EDM44323.1
COG0708 Exonuclease III.
       0.557
EDM44224.1
COG1843 Flagellar hook capping protein.
  
  
 0.552
EDM43109.1
OmpA family protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
 
 
0.547
EDM44447.1
OmpA domain protein; COG3047 Outer membrane protein W.
  
 
 
0.543
EDM43338.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 
 0.526
EDM45274.1
Putative peptidase; COG4942 Membrane-bound metallopeptidase.
  
  
  0.523
EDM43477.1
COG2849 Uncharacterized protein conserved in bacteria.
  
 
   0.498
EDM45258.1
Gliding motility-related protein; COG0457 FOG: TPR repeat.
  
 
   0.478
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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