STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44325.1Conserved repeat domain; COG2759 Formyltetrahydrofolate synthetase. (988 aa)    
Predicted Functional Partners:
ribB
Bifunctional protein: GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
 
 0.786
EDM43005.1
Hypothetical protein.
  
     0.649
EDM45460.1
Hypothetical protein.
  
     0.596
EDM42881.1
Sensor histidine kinase/GAF domain hybrid protein; COG2203 FOG: GAF domain.
  
 
 0.594
EDM43948.1
Hypothetical protein.
  
  
  0.568
EDM45435.1
Hypothetical protein.
  
     0.529
EDM44326.1
Conserved repeat domain.
 
    
0.515
EDM43160.1
Outer membrane protein, ompH family; COG2825 Outer membrane protein.
  
     0.498
EDM44542.1
Conserved hypothetical signal peptide protein.
  
     0.492
EDM44882.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.491
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
Server load: low (28%) [HD]