STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44329.1Hypothetical protein; COG1196 Chromosome segregation ATPases. (296 aa)    
Predicted Functional Partners:
EDM44364.1
Hypothetical protein; COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog).
  
     0.687
EDM44053.1
Hypothetical protein.
  
     0.675
EDM44304.1
COG2819 Predicted hydrolase of the alpha/beta superfamily.
  
     0.657
EDM43076.1
Hypothetical protein.
  
     0.637
EDM45272.1
TPR-repeat-containing protein; COG0457 FOG: TPR repeat.
  
     0.636
EDM45247.1
Hypothetical protein.
  
     0.627
EDM43948.1
Hypothetical protein.
  
     0.624
EDM43577.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.619
infB
Translation initiation factor IF-2; COG0457 FOG: TPR repeat.
  
     0.607
EDM43558.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
     0.606
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.