Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44346.1Hypothetical protein. (517 aa)    
Predicted Functional Partners:
EDM44507.1
Hypothetical secreted protein.
  
  
  0.836
EDM44183.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
    0.773
EDM44182.1
Hypothetical protein.
  
    0.770
EDM45621.1
CHU large protein; uncharacterized.
  
     0.764
EDM45563.1
Hypothetical protein.
  
     0.757
EDM42919.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 
   0.755
EDM44179.1
Hypothetical protein.
  
     0.736
EDM45121.1
Hypothetical protein.
  
     0.724
EDM44551.1
OmpA domain protein; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 
  0.719
EDM45569.1
Hypothetical protein; COG3291 FOG: PKD repeat.
  
     0.714
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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