STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44367.1Hypothetical protein; COG0457 FOG: TPR repeat. (296 aa)    
Predicted Functional Partners:
EDM44366.1
COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
     0.993
EDM44368.1
batD protein.
     0.959
EDM44365.1
Aerotolerance-related membrane protein; COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
     0.941
EDM44369.1
Aerotolerance-related exported protein; COG0457 FOG: TPR repeat.
 
     0.941
EDM44364.1
Hypothetical protein; COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog).
 
     0.890
EDM44363.1
Hypothetical protein; COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
 
     0.847
EDM42975.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
    
  0.817
EDM42919.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
  
  0.814
EDM44362.1
Hypothetical protein; COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
 
     0.811
ribB
Bifunctional protein: GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.808
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.