Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44384.1COG1309 Transcriptional regulator. (196 aa)    
Predicted Functional Partners:
EDM44385.1
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
     0.722
EDM44382.1
Hypothetical protein; COG5658 Predicted integral membrane protein.
       0.554
EDM44383.1
Hypothetical protein; COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold.
       0.554
EDM45257.1
Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
   
 
 0.541
EDM43586.1
phenylacetate-CoA oxygenase, PaaK subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
   
 
 0.541
EDM44386.1
Thioesterase-like protein; COG0824 Predicted thioesterase.
       0.518
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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